PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022698.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 263aa    MW: 30310.3 Da    PI: 5.0409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022698.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-3054112259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+ +Hnh+
  Pbr022698.1  54 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTCSHNHS 112
                  699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3046113IPR003657WRKY domain
SuperFamilySSF1182906.02E-2550114IPR003657WRKY domain
SMARTSM007741.3E-3353113IPR003657WRKY domain
PROSITE profilePS5081130.49254114IPR003657WRKY domain
PfamPF031061.3E-2455111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDATLSPEPD SDVSKELRPE TRSSKRRKLA HEKTVVTVKI GANVGKLKNE GPPSDLWSWR  60
KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERSKTDASV LIITYTCSHN HSGPPDVNVI  120
STTQQEHDQK QEQEQEQEQE QEQEQEQEQD QKQDQKQEQE QEHRKLEEHF HYIESPVRSS  180
QEEEHIFIAH DTSFGFLLDE KQEPLSLSYS QLMSFSTPKL SEENNDFFDE LEELPTFSSF  240
PSFMRRTNNL SFGIERIPSV PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20541141779Disease resistance protein RRS1
5w3x_D2e-20541141779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022698.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1803062e-87DQ180306.1 Fragaria x ananassa clone PBCESTFXA1 SSR marker.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378733.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A498K5751e-152A0A498K575_MALDO; Uncharacterized protein
STRINGXP_009378733.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-35WRKY DNA-binding protein 35