PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022083.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 477aa    MW: 51440.2 Da    PI: 8.6371
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022083.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.2e-11155192143
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 
                  s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa
  Pbr022083.1 155 SEYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAA 192
                  569******************......55**********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-11155220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-12156220IPR001471AP2/ERF domain
PROSITE profilePS5103212.694156220IPR001471AP2/ERF domain
SMARTSM003801.2E-26156226IPR001471AP2/ERF domain
CDDcd000189.02E-21157219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLDLNVNFIT ITETNSVEVE DSGTSNSSVV NAEEALTPSN AGDEDSTNNT TSSFMFDILK  60
REKGGLRNYG AGGQAQSMQF VTRSLFPVTG DGGGGKEGEG YGLGLSSSSS PTARPQGLKL  120
SVAESEEQTQ AELRVVQQKK QPPRKSRRGP RSRSSEYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHS AASSLGFNDF RAYDRAAIKF RGVDADINFN LGDYEEDMKL LGDLNKEDFV  240
HALRRHSTGA SRGNSKYRGV AAAALPKCGA RWEALMGQVP GNNVFEKKAG KCRTGREAVT  300
NFDPNVYEGE IVLQASIEGS GHNLDLSLGI SQPCSTGKMG KGKFGDFQFP KEKPMVNGFC  360
SAAVGVGQPP HVLTMVAKHP ALYPGFVQKH EEMASGHNRL QPISSPRYTN WAWQVHGNSN  420
NVSPMQVYSI AASSGFPSST ATTPPSATYL PPNLQDGSAS AYNVRRLPFP AASSMY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022083.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324360.0GU732436.1 Malus x domestica AP2 domain class transcription factor (AP2D12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378134.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A498KNI90.0A0A498KNI9_MALDO; Uncharacterized protein
STRINGXP_009378134.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-65related to AP2.7