PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr022066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25063.5 Da PI: 6.7507 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.9 | 6.1e-42 | 75 | 174 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+a+la+++ Pbr022066.1 75 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQEIPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVGELQAQLAKAQ 172 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Pbr022066.1 173 AE 174 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.747 | 74 | 175 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-42 | 75 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEFIAKTTTT PTSPPPFSHS LSSSISSPST APFPSPNSHH LSNYSSPHAA NSNIATNPFP 60 TYPSPPPPPP VVLSPCAACK ILRRRCVEKC VLAPYFPPTE PLKFTIAHRV FGASNIIKLL 120 QEIPESHRAD AVSSMVYEAN ARIRDPVYGC AGAICQLQKQ VGELQAQLAK AQAELVNMQC 180 EQGNLIALIC MDMTQSKEQA ILQQQQSNCN DTSCFPDENN LGTTWEPLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 67 | 185 | 3 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 67 | 185 | 3 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr022066.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378147.1 | 1e-170 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A498KNK6 | 1e-114 | A0A498KNK6_MALDO; Uncharacterized protein | ||||
STRING | XP_009378147.1 | 1e-169 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-62 | LOB domain-containing protein 1 |