PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr021980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24380.6 Da PI: 7.8146 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.2 | 1.5e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Pbr021980.1 2 SCNGCRVLRKGCSDTCILRSCLywidsPEAQGNATLFLAKFFGRSDLLSFVSAVPENQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQSAVE 99 6***********************************************************************************************99 PP DUF260 94 lal 96 ++l Pbr021980.1 100 TVL 102 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.946 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.5E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDTCILR SCLYWIDSPE AQGNATLFLA KFFGRSDLLS FVSAVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLCGGALRPL QAFTTPTLDE 120 SSDSFSRGSC TPKNRYCPSA SAYYDAERIQ PFEAAGLSLK PNLVAAERGR GRGMWICVSA 180 AMDQRRRDTV SFDSEESVMT TTTTRTFESG GGDLKDRKLL NLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr021980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354105.1 | 1e-165 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 3e-61 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A498J9U7 | 1e-150 | A0A498J9U7_MALDO; Uncharacterized protein | ||||
STRING | XP_009354105.1 | 1e-164 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-63 | LOB domain-containing protein 39 |
Publications ? help Back to Top | |||
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