PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021930.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 305aa    MW: 34014.2 Da    PI: 9.5595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021930.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.2e-11191212122
                  ---SS-EEEEEEE--TT-SS-E CS
         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                  ldDgy+WrKYGqK+vk++++pr
  Pbr021930.1 191 LDDGYKWRKYGQKVVKNTQHPR 212
                  59*******************9 PP
2WRKY52.11.3e-162462832259
                  EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   sYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Pbr021930.1 246 MSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHVHS 283
                  59***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-30176211IPR003657WRKY domain
SuperFamilySSF1182902.48E-9184213IPR003657WRKY domain
PROSITE profilePS5081121.804186285IPR003657WRKY domain
SMARTSM007743.5E-32191284IPR003657WRKY domain
PfamPF031063.4E-7192213IPR003657WRKY domain
PfamPF031067.5E-11244282IPR003657WRKY domain
SuperFamilySSF1182901.96E-12246284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-30246283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASRTSQAAI LNHHHHHQPL GLFENQEGEG CNTQMDFFPF PQNLTFSSLP LVGHQSLKGG  60
LSTASIASDD APSTTTLSET LVPRPSLTPP LRHKQDHNIT TSSEFGGGGG GGGGPHGHLL  120
SLQRSTANLW AWGDVSDEYC LNSKRSSGGD DSHHPYLGGL SAMKMKKMKA IRRKVREPRF  180
CFKTLSDVDV LDDGYKWRKY GQKVVKNTQH PRLLQARLGA GDLMVNVAIA KAISKKNYNY  240
YYSSKMSYYR CTMDNCRVKK RVERLAEDPR MVITTYEGRH VHSPSHDLDD QDSRSPSHLN  300
NFFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021930.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354053.10.0PREDICTED: probable WRKY transcription factor 13
TrEMBLA0A498HYP50.0A0A498HYP5_MALDO; Uncharacterized protein
STRINGXP_009354053.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-47WRKY DNA-binding protein 13