PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021389.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 176aa MW: 18982.6 Da PI: 8.1357

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021389.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.9	2.8e-46	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++ Pbr021389.1 15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQ 112 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Pbr021389.1 113 AE 114 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.04	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-45	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKENGSSRKQ GAPSPCAACK LLRRRCAQDC VFAPYFPADE PQKFANVHKV FGASNVNKML 60 QELPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDVLQTQLAL AQAEVVHLRV 120 RQTASFSNHG LSPASPSNSG SPPAKFMGSQ ARPIFDMDMM VDHASLGLGE SMWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	11	116	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	11	116	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021389.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353911.1	1e-129	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	7e-80	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314YWZ3	1e-123	A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRING	XP_009353911.1	1e-128	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	9e-82	LOB domain-containing protein 4