PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr020403.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 525aa MW: 57358 Da PI: 9.1304

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr020403.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.9e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pbr020403.1 97 FVCEICKKGFQRDQNLQLHRRGH 119 89*******************88 PP
2	zf-C2H2	15.5	4.8e-05	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Pbr020403.1 173 WKCDKCSKKYAVQSDWKAHQKTC 195 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.46E-7	96	119	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	96	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	97	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	97	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	138	168	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-4	161	194	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.46E-7	168	194	No hit	No description
SMART	SM00355	94	173	193	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MSIITGSAAT GSFSSGNTGG EEVQQQQQEL LNHHANFHGS NSFLPTTPNI NSNGISTTQV 60 QKQPPPAKKK RNLPGTPDPT AEVIALSPKT LMATNRFVCE ICKKGFQRDQ NLQLHRRGHN 120 LPWKLKQRTS TEIIKRVYIC PESSCVHHDP LRALGDLTGI KKHFFRKHGE KTWKCDKCSK 180 KYAVQSDWKA HQKTCGTREY RCDCGTIFSR RDSFITHRAF CDAIAEENNR NQGVVPMSNN 240 IMGAPNQGQL SNSELVIPAS PPMNNKITDN PSSARSDTTT SDQFHHNFDA KNAPLTLEPQ 300 LPFPMPTKPV NMLPRTLNNN TSSSTSSSSL LFGLNHSGHG QSLIPNSSGH LSATQLLQKA 360 AQMGATMSGG PKPNPSGTTI TSMAPSTYGT ATGGYNMNPF MQQRDPNNIL QLETSPQFFG 420 ANYAQLGMFS GMLFDHTQNN GLLKNMEHEN NGTSNKIGFG GASNVSNGDT LTVDFLGLGG 480 SGNNNRAENF HDLQKQQHGQ QDQLGFGGID DHDDHLRMQR FGRS*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MSIITGSAAT GSFSSGNTGG EEVQQQQQEL LNHHANFHGS NSFLPTTPNI NSNGISTTQV  60
QKQPPPAKKK RNLPGTPDPT AEVIALSPKT LMATNRFVCE ICKKGFQRDQ NLQLHRRGHN  120
LPWKLKQRTS TEIIKRVYIC PESSCVHHDP LRALGDLTGI KKHFFRKHGE KTWKCDKCSK  180
KYAVQSDWKA HQKTCGTREY RCDCGTIFSR RDSFITHRAF CDAIAEENNR NQGVVPMSNN  240
IMGAPNQGQL SNSELVIPAS PPMNNKITDN PSSARSDTTT SDQFHHNFDA KNAPLTLEPQ  300
LPFPMPTKPV NMLPRTLNNN TSSSTSSSSL LFGLNHSGHG QSLIPNSSGH LSATQLLQKA  360
AQMGATMSGG PKPNPSGTTI TSMAPSTYGT ATGGYNMNPF MQQRDPNNIL QLETSPQFFG  420
ANYAQLGMFS GMLFDHTQNN GLLKNMEHEN NGTSNKIGFG GASNVSNGDT LTVDFLGLGG  480
SGNNNRAENF HDLQKQQHGQ QDQLGFGGID DHDDHLRMQR FGRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-34	169	240	3	71	Zinc finger protein JACKDAW
5b3h_F	9e-34	169	240	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr020403.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB116545	0.0	AB116545.1 Malus x domestica MdZF1 mRNA for zinc finger protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009376645.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-108	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	Q764N7	0.0	Q764N7_MALDO; Zinc finger protein
STRING	XP_009376645.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]