PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 590aa MW: 65071.6 Da PI: 8.9362 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.4e-10 | 272 | 332 | 2 | 55 |
HHHHHHHHHHHHHHHHHH...........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa...........feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Pbr020204.1 272 RSKHSATEQRRRSKINDRqvslqyntkfiFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 332 889**************8888888888889*********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-20 | 267 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-13 | 269 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.436 | 270 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 272 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-12 | 272 | 335 | No hit | No description |
SMART | SM00353 | 6.3E-6 | 276 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MELPQSRPFG TEGRKPTHDF LSLHAHSVAQ QDPRPPAQGR YLETHDFLRP LERMGKPCIA 60 KEETSVEIST AEKQPSHAAA QPTTSVEHIL PGGIGTYSIS HISYFNQRVP KPEGSPVFTV 120 AQTSSNERNV DENSNCSSHT GSGFTLWEES AKNKGKTGKE NVVGERPAGT VRATGVLTGQ 180 WTSSERPAQS SSNNHRSCFT SQSSGQKNMS FMEMMKYAAK GSTQEAELDD EEEFVLKKET 240 STTTTNATTT YKSDLRVNVD VKSSDQKANT PRSKHSATEQ RRRSKINDRQ VSLQYNTKFI 300 FQMLRELIPH SDQKRDKASF LLEVIEYIQF LQERVNKYEG PYQGWNHDPA KLMPWINDHK 360 LRESYCDQSR GMNGVSGPAL PFAAKFDEKP TSVLPTIPGS CAQNPVESDT STETTFKAVD 420 HHPGITSKSM PFPLSMQPNF FAPVRSSAAA AAVPPIPPRL PSDAENTSQH RSMLCQTRSC 480 APDGTATRDK LKEQEMTIEG GRINISSAYS QGLLNTLTQA LQSSGVDLSQ ASISVKIELG 540 KRANRRSPIP KSAIKENEIP TSTLGKKHSV IASSEESEQA QKKLKTFRN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020204.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346339.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X1 | ||||
Refseq | XP_009346347.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X1 | ||||
Refseq | XP_018500665.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X1 | ||||
Swissprot | Q9LEZ3 | 1e-130 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A498I7B9 | 0.0 | A0A498I7B9_MALDO; Uncharacterized protein | ||||
STRING | XP_009346339.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-126 | bHLH family protein |
Publications ? help Back to Top | |||
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