PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 693aa MW: 78268 Da PI: 6.6194 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 384 | 1.7e-117 | 320 | 689 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+av++ d++ a++lL+++++++sp gd++qRla+yf+ +L+arla+ ++ +y+ l ++ts +++ l+a+++f sP+ +s+++a Pbr018920.1 320 LRTLLTQCAQAVANYDQRTASELLQKIRHHSSPCGDANQRLAHYFADGLEARLAGATTPTYSFLVGTQTS---TADILKAYQVFISSSPFKLMSNFMA 414 6789************************************************************999999...8************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ e+++r+H+iDf+is+G+QWp+++q L++R++gpp+lRiT+++ p++g +e++eet++rL+k+Ae+++vpfe nv +a+++e++++e+L Pbr018920.1 415 NRTIMKLSENATRLHVIDFGISYGFQWPCFIQHLSERTGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIKFEDL 511 ******************************************************9****************************9.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 r+++ E ++Vn++ +l++++de+v +s+rd vLkl+k+++P+v+++ + +n++ F++rf eal++ysa+fd lea++pre+e r+ E+++ gr Pbr018920.1 512 RIDRSELTVVNCMCRLKHIPDETVMASSPRDIVLKLIKKINPDVFIHGVVNGTYNAPFFATRFREALYHYSAFFDILEATVPREDEMRRLFEKAIYGR 609 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivnvvaceg er+er et+++W+ r +aGFk++pl++ k +k++l+ +++d +r++e+ +++++ W++r+++++S+W Pbr018920.1 610 DIVNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQALLKRVKRMLKSYHDD-FRIDEDGNWMLQSWRGRTILALSVW 689 *****************************************************66.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.268 | 294 | 671 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-115 | 320 | 689 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MDTLLERYDV SVERLNFGSV YPHQNLVNGF KVNHESTNSI FPPTNLDHNS SDSSTYSSTG 60 SDGDSIDPND FNHPMLKYIS DILLEEDLEG KPCMMQGCLA LQAAEKSFFD VLNPKGPPSP 120 NQPPLSHSLE NSDDDSTPSF HSGNGSSIAA KTDWGFDSSE TSHFQSSLVE SQSDNLLVSD 180 LLSELQSSGH FGGVGEASKF LPNGSFGTFD QERNHLMHPG PDLRPPGTRT LVRRPENYGY 240 NSTNILKGKK NHQREDVDYP EEGRSSKLPV AFADDSEPPQ EMFDEVLLCH GHHRLGNKQA 300 KGAKTTRSKK QNNNTEMVDL RTLLTQCAQA VANYDQRTAS ELLQKIRHHS SPCGDANQRL 360 AHYFADGLEA RLAGATTPTY SFLVGTQTST ADILKAYQVF ISSSPFKLMS NFMANRTIMK 420 LSENATRLHV IDFGISYGFQ WPCFIQHLSE RTGGPPKLRI TAIELPQPGF RPTERVEETA 480 RRLKKYAERF NVPFECNVIA QKWETIKFED LRIDRSELTV VNCMCRLKHI PDETVMASSP 540 RDIVLKLIKK INPDVFIHGV VNGTYNAPFF ATRFREALYH YSAFFDILEA TVPREDEMRR 600 LFEKAIYGRD IVNVVACEGL ERVERPETYK QWQVRNVRAG FKQLPLDQAL LKRVKRMLKS 660 YHDDFRIDED GNWMLQSWRG RTILALSVWV PA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-46 | 302 | 691 | 1 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018507265.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A498KAI2 | 0.0 | A0A498KAI2_MALDO; Uncharacterized protein | ||||
STRING | XP_008359011.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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