PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018219.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 584aa MW: 65950.1 Da PI: 5.5982

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018219.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	469	526	2	47
SSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqky 47 +rWT+eE+++++d+vk+ ++ W++ ++ + ++t+++++s+++++ Pbr018219.1 469 LRWTAEEEKRFKDLVKLNHSNspffegntsnsssFWDSASKWFL-RKTREDLVSYYFNV 526 79***************99*********99888887.9**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01014	4.6E-13	47	140	No hit	No description
PROSITE profile	PS51011	17.834	50	144	IPR001606	ARID DNA-binding domain
SMART	SM00501	1.5E-11	51	145	IPR001606	ARID DNA-binding domain
SuperFamily	SSF46774	3.53E-15	55	145	IPR001606	ARID DNA-binding domain
Gene3D	G3DSA:1.10.150.60	8.8E-13	56	144	IPR001606	ARID DNA-binding domain
Pfam	PF01388	1.6E-9	58	140	IPR001606	ARID DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MAGWSSLTAG SVSDCVETID KCQKNGVFPE TNHVGSVKDG VDFDEGDQMG RLRCIFNRVL 60 AVFLKEIGDG GGFVRPVPAV IGDRQPVDLF KLFCVVKDRG GIDSISKNIL WSFVANELGF 120 DQEAMCSVKL IYFKYLNELE KWFREICETR SSGNGDLHPL SSELVREFGG LLSGWPERKG 180 KSDGEVHLVS GECNGDDDEK VCNYDQSDIL ISLSSLNKKE NDRKRKREYL VGMLNWVVQV 240 AKQPNDPSIG AIPGPTKWKE HRSDDECWVQ ALRAKEALLI RRNVNSKTEE CLQQKKLKMH 300 PLLYEDNIVA GRQCSGRFRC SERLPHSVKS QSCPCCHKKE VENDSMEKAP AEVDLLSTDA 360 TSEENPHEKD VSIGAHAQAD VPEWTGVASE SDIKWLGTRV WPLKREEDGP LSETDLIGQG 420 RQDKCGCGFP GSVACFRFHI TEARMKLKRE LGSLFYHWRF DRMGEEVSLR WTAEEEKRFK 480 DLVKLNHSNS PFFEGNTSNS SSFWDSASKW FLRKTREDLV SYYFNVFVVQ RRSYQNRATP 540 KTIDSDDDVT ELGSLSNGFR REIVEVSANS LPCSLNQQST DFD*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MAGWSSLTAG SVSDCVETID KCQKNGVFPE TNHVGSVKDG VDFDEGDQMG RLRCIFNRVL  60
AVFLKEIGDG GGFVRPVPAV IGDRQPVDLF KLFCVVKDRG GIDSISKNIL WSFVANELGF  120
DQEAMCSVKL IYFKYLNELE KWFREICETR SSGNGDLHPL SSELVREFGG LLSGWPERKG  180
KSDGEVHLVS GECNGDDDEK VCNYDQSDIL ISLSSLNKKE NDRKRKREYL VGMLNWVVQV  240
AKQPNDPSIG AIPGPTKWKE HRSDDECWVQ ALRAKEALLI RRNVNSKTEE CLQQKKLKMH  300
PLLYEDNIVA GRQCSGRFRC SERLPHSVKS QSCPCCHKKE VENDSMEKAP AEVDLLSTDA  360
TSEENPHEKD VSIGAHAQAD VPEWTGVASE SDIKWLGTRV WPLKREEDGP LSETDLIGQG  420
RQDKCGCGFP GSVACFRFHI TEARMKLKRE LGSLFYHWRF DRMGEEVSLR WTAEEEKRFK  480
DLVKLNHSNS PFFEGNTSNS SSFWDSASKW FLRKTREDLV SYYFNVFVVQ RRSYQNRATP  540
KTIDSDDDVT ELGSLSNGFR REIVEVSANS LPCSLNQQST DFD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018219.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375018.1	0.0	PREDICTED: AT-rich interactive domain-containing protein 2-like
Refseq	XP_009375038.1	0.0	PREDICTED: AT-rich interactive domain-containing protein 2-like
TrEMBL	A0A498JJ70	0.0	A0A498JJ70_MALDO; Uncharacterized protein
STRING	XP_009375018.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009375038.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3996	7	8