PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017491.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 321aa    MW: 36483.1 Da    PI: 5.7656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017491.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025727323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k+Fs+   +  H+r+H
  Pbr017491.1  7 CKICNKRFSNGKAMGGHMRSH 27
                 *******************99 PP
2zf-C2H214.20.00013181203123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  Pbr017491.1 181 YKCETCDKVFRSYQALGGHRASH 203
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.49E-8427No hitNo description
PfamPF139125.3E-9429IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138532IPR007087Zinc finger, C2H2
SMARTSM003550.078527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576676.49E-8176203No hitNo description
PROSITE profilePS501579.93181203IPR007087Zinc finger, C2H2
SMARTSM003550.012181203IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-11181205IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
PfamPF139121.8E-6241264IPR007087Zinc finger, C2H2
SMARTSM003555.8242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016242264IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKHRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP QQQQQQHHQL SNSPESLSLP  60
FSTSNRGMHS SLDSALIHDD SDSESHPRNP TRRRSKRRRK VIGKSSPQPF EAEQVSSVSD  120
TFSTEDVARC LIMLSMDKWK KVKVKNGVDK SVEEEEEEEE SDSGGRSDFR IKDRVRSRGK  180
YKCETCDKVF RSYQALGGHR ASHKKTIKTQ VFDDYEEEED EDFEEDDGQD GNQDVVENHR  240
TFECCVCFRQ FDSGQALGGH KKVHYYNNLT NNAPARNVNL SSSSTNFVDN LVIDLNLPAP  300
EEEEEEDEEV SQVEFSTVSD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017491.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374469.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLD9ZIS01e-170D9ZIS0_MALDO; C2H2L domain class transcription factor
STRINGXP_009374469.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-39C2H2-like zinc finger protein