PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015699.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 222aa    MW: 24796.6 Da    PI: 5.7549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015699.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17119169255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     k +r++lg+f+t  +Aaka++ a+ kl+g
  Pbr015699.1 119 HYRGVRRRP-WGKFAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 169
                  7********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-31118178IPR001471AP2/ERF domain
CDDcd000183.12E-29119177No hitNo description
SuperFamilySSF541711.37E-22119178IPR016177DNA-binding domain
PROSITE profilePS5103224.566119177IPR001471AP2/ERF domain
SMARTSM003809.0E-36119183IPR001471AP2/ERF domain
PfamPF008471.2E-12119169IPR001471AP2/ERF domain
PRINTSPR003673.8E-13120131IPR001471AP2/ERF domain
PRINTSPR003673.8E-13159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPANEEQDDS TLELIRQYLL GDFTFTDSFI SHLNFQFQPV KPEYSSLSES GPSSPISNPN  60
HHSPQFSTSE TKPEIVNLPS MEAEPLNLSS PKRKNSTSQN PGPKDELQQV SGPGDALRHY  120
RGVRRRPWGK FAAEIRDPAR KGTRVWLGTF DTDVDAAKAY DCAAFKLRGR KAILNFPLEA  180
GVSEPPVNTA RKRRRSVKQE EVAETEELEL QSWVLWEGEG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28118184470ATERF1
3gcc_A5e-28118184470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RKRRR
2190195RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015699.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9013710.0HQ901371.1 Pyrus x bretschneideri clone PbzsERFAP2 ERFAP2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372830.11e-163PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLG0Z8131e-160G0Z813_9ROSA; ERFAP2-like protein
STRINGXP_009372830.11e-162(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-44ERF family protein