PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015297.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 357aa    MW: 38915.1 Da    PI: 10.2912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015297.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.3e-31285342359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Pbr015297.1 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGDHNHS 342
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17235281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-32271342IPR003657WRKY domain
PROSITE profilePS5081130.676278344IPR003657WRKY domain
SuperFamilySSF1182901.44E-26280342IPR003657WRKY domain
SMARTSM007741.4E-37283343IPR003657WRKY domain
PfamPF031061.4E-26285341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAVDFMGYRN TSSNSSFSAK LEENAVQEAA SGLQSVEKLI RLLSQAQQNQ HQDKYPSTAM  60
DMDCRAVADV AVSKFKKVIS LLGRTRTGHA RFRRAPLSKF KKVISLLGRT RTGHARLGGA  120
PLTLTPGSSF QPQYQSHSQD IVVKQAPLES TEVYHATPIQ QIPPPHHHHH SMVLESTMDS  180
SNTINFSYSA ATSFMSSLTG DSDSKQPMSS SAFQITNLSQ VSSAGKPPLS STSLKRKCGS  240
ENLGSGKCGV GSSGRCHCSK KRKLRQKRVV RVPAISLKMA DIPPDDYSWR KYGQKPIKGS  300
PHPRGYYKCS SVRGCPARKH VERALDDPAM LVVTYEGDHN HSLSVAETSN LILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-212803431476Probable WRKY transcription factor 4
2lex_A6e-212803431476Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015297.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981390.0FJ598139.1 Malus hupehensis WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506496.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotQ9STX04e-87WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A498HZG00.0A0A498HZG0_MALDO; Uncharacterized protein
STRINGXP_009372435.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-75WRKY DNA-binding protein 7