PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013706.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 520aa    MW: 58310.2 Da    PI: 6.6811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013706.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10326371454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L
  Pbr013706.1 326 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVLYINEL 371
                  799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-3922219IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.88E-13320376No hitNo description
PROSITE profilePS5088815.542322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16325388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16326387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MEEIISSCSP PTFCKETSFT FQQRLQFIVQ NRSEWWVYSI FWQASKGSIS DQVSLSWAGG  60
HFWNTHDHLA SKRSSGVINS YQPKFGFSNG ERSKVINREV EDLLHDDMVD LDMRLVDRED  120
VTDSEWFYFY TLSLTQSFSA SQGNNSKNIV GRAFGSGGFV WLAGDHDFQF YECERVKEAR  180
MHGIQTLVCI ATPFGVLELA SLDVIKEDWG LVHLSKSLFG LDGNINMNNN NKKKLSKQQT  240
TRDGNVLVPI LENGLFSAAQ KELIRQDQGG SKNEDAPINL GESSPETPSA SVGNLTTENT  300
ENMTRLKKRG RSSNHGAASR ELQLLNHVEA ERQRREKLNH RFYVLRSVVP NVSKMDRSSL  360
LADAVLYINE LKSKVEELEA KVQEQTQKPK AGNNANNNLD HHSSQSTSSI VDQHHYSYYN  420
ISNNSNSNNN SNSDRAAAAA VEVDVKIMGA DVIIRVQCPD EDYPYVKLMN ALKGLGLQVY  480
HASISSVKEL MVQDVVARLP YGFTGKEALR NGIMKGWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-21112192192Transcription factor MYC3
4rqw_B2e-21112192192Transcription factor MYC3
4rs9_A2e-21112192192Transcription factor MYC3
4yz6_A2e-21112192192Transcription factor MYC3
5gnj_A4e-22325375757Transcription factor MYC2
5gnj_B4e-22325375757Transcription factor MYC2
5gnj_E4e-22325375757Transcription factor MYC2
5gnj_F4e-22325375757Transcription factor MYC2
5gnj_G4e-22325375757Transcription factor MYC2
5gnj_I4e-22325375757Transcription factor MYC2
5gnj_M4e-22325375757Transcription factor MYC2
5gnj_N4e-22325375757Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013706.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370919.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498I7R10.0A0A498I7R1_MALDO; Uncharacterized protein
STRINGXP_009370919.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-65bHLH family protein