PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24793.6 Da PI: 6.2576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 119 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+f+t +Aaka++ a+ kl+g Pbr012686.1 119 HYRGVRRRP-WGKFAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 169 7********.**********8...4445**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 118 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.15E-29 | 119 | 177 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-22 | 119 | 178 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.566 | 119 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-36 | 119 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 119 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 159 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPAHEEQDDS TLELIRQHLL GDFTFTDSFI SHLNFQFQPV KPEYSSLSES GPSSPISNPN 60 HHSPQFSTSE TKPEIVNLPS MEAEPLNLSS PKRKNSTSQN PGPKDELQQV SGPGDALRHY 120 RGVRRRPWGK FAAEIRDPAR KGTRVWLGTF DTDVDAAKAY DCAAFKLRGR KAILNFPLEA 180 GVSEPPVNTA RKRRRSVKQE EVAETEELEL QSWVLWEGEG A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-28 | 118 | 184 | 4 | 70 | ATERF1 |
3gcc_A | 5e-28 | 118 | 184 | 4 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 194 | RKRRR |
2 | 190 | 195 | RKRRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr012686.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ901371 | 0.0 | HQ901371.1 Pyrus x bretschneideri clone PbzsERFAP2 ERFAP2-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009370425.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | G0Z813 | 1e-160 | G0Z813_9ROSA; ERFAP2-like protein | ||||
STRING | XP_009370425.1 | 1e-163 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-44 | ERF family protein |