PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012678.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 350aa    MW: 38016 Da    PI: 10.2576
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012678.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
      Pbr012678.1 100 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.95693149IPR017930Myb domain
SuperFamilySSF466899.66E-1795148IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-1896148IPR006447Myb domain, plants
SMARTSM007171.5E-1197147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1297143IPR009057Homeodomain-like
PfamPF002492.3E-11100144IPR001005SANT/Myb domain
CDDcd001676.11E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVKESARKCS HCGHNGHNSR TCNHGHGNKG VCLKLFGVNI MEIEEDSIKK SYSMGNLLAD  60
GTGDHNNNAV VAGHDAGYLS DGLIHNKRHK AAHERNKGRP WTEEEHRVFL AGLKKLGKGD  120
WRGIARNFVT TRTPTQVASH AQKYFLRQAT NDKRKRRSSL FDMHFKELSE QGPQDSSISP  180
TKSADETSPQ ASSSKTMPLK INTANNSPPA SNVPTRILNR FPHVCLDSPP ALPLSPTCTL  240
PNYPAMPFMM RIPANVPYAP MTHFYRPSYH HMIKNHGNFP TCAPVISHPS GIPSSPRSLP  300
SSPSMAAGRI SSMTSAAEKD ALELKIGQPQ PSHGASLSPP SSSGAIRVT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370418.10.0PREDICTED: myb-like protein J
TrEMBLA0A498KKE50.0A0A498KKE5_MALDO; Uncharacterized protein
STRINGXP_009370418.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-68MYB_related family protein