PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012104.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 537aa    MW: 59074 Da    PI: 8.0366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012104.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05133155123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+Cg+sF++ ++  +H  ++
  Pbr012104.1 133 FECPICGQSFRSEDEVSVHVDSC 155
                  89*****************8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.6E-92237No hitNo description
Gene3DG3DSA:3.10.20.901.6E-96970No hitNo description
PROSITE profilePS501578.829133162IPR007087Zinc finger, C2H2
CDDcd092121.04E-20187282No hitNo description
SuperFamilySSF1435031.31E-17197262IPR018997PUB domain
SMARTSM005801.1E-20200267IPR018997PUB domain
PfamPF094092.7E-16201273IPR018997PUB domain
SuperFamilySSF542367.23E-12344457IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.6E-9361455No hitNo description
PROSITE profilePS5003311.324373457IPR001012UBX domain
PfamPF007895.9E-6374424IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MGDMKDKFKG FMKNTFSSSS SGKFKGQGRV LGSSSSSGPA DSVLTRPKQA PQSHPKPVSN  60
SNPNSSVAFP NPKPSPQKTQ IIDQEKTQIP DQSKAEPSID SKPDRKTETG FDPFDALITP  120
GKRSQNGFTL NVFECPICGQ SFRSEDEVSV HVDSCVNTTV ETKSVEGVGV SGSPDNRSEL  180
SRSELEARIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRRIRMSNPK IREAIGEVVG  240
GIELLEFVGF ELKEEDGEMW AVMEVPKEEQ INLMKGGIAL LEPPKVQEVD ISASIASLKV  300
DEPVEPKKVD RQTRVFFSVS ESVAARIEVP ASFYNLSATE LKREAEMRKK KIEDSQMLIP  360
KSFKEKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL  420
LNPVALKRRV IPHFPAAGKK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNELLEVSEP  480
LTSXXXXXXX XXXRFSCCSC VRFEPSVSSC ICFSRSPCNS SAKLHFGYPF FHLICT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifw_A4e-1232845723146Tether containing UBX domain for GLUT4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012104.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501937.10.0PREDICTED: plant UBX domain-containing protein 2
SwissprotQ9ZU931e-180PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A498IDB40.0A0A498IDB4_MALDO; Uncharacterized protein
STRINGXP_009351535.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]