PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 59074 Da PI: 8.0366 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+sF++ ++ +H ++ Pbr012104.1 133 FECPICGQSFRSEDEVSVHVDSC 155 89*****************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 1.6E-9 | 22 | 37 | No hit | No description |
Gene3D | G3DSA:3.10.20.90 | 1.6E-9 | 69 | 70 | No hit | No description |
PROSITE profile | PS50157 | 8.829 | 133 | 162 | IPR007087 | Zinc finger, C2H2 |
CDD | cd09212 | 1.04E-20 | 187 | 282 | No hit | No description |
SuperFamily | SSF143503 | 1.31E-17 | 197 | 262 | IPR018997 | PUB domain |
SMART | SM00580 | 1.1E-20 | 200 | 267 | IPR018997 | PUB domain |
Pfam | PF09409 | 2.7E-16 | 201 | 273 | IPR018997 | PUB domain |
SuperFamily | SSF54236 | 7.23E-12 | 344 | 457 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 1.6E-9 | 361 | 455 | No hit | No description |
PROSITE profile | PS50033 | 11.324 | 373 | 457 | IPR001012 | UBX domain |
Pfam | PF00789 | 5.9E-6 | 374 | 424 | IPR001012 | UBX domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MGDMKDKFKG FMKNTFSSSS SGKFKGQGRV LGSSSSSGPA DSVLTRPKQA PQSHPKPVSN 60 SNPNSSVAFP NPKPSPQKTQ IIDQEKTQIP DQSKAEPSID SKPDRKTETG FDPFDALITP 120 GKRSQNGFTL NVFECPICGQ SFRSEDEVSV HVDSCVNTTV ETKSVEGVGV SGSPDNRSEL 180 SRSELEARIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRRIRMSNPK IREAIGEVVG 240 GIELLEFVGF ELKEEDGEMW AVMEVPKEEQ INLMKGGIAL LEPPKVQEVD ISASIASLKV 300 DEPVEPKKVD RQTRVFFSVS ESVAARIEVP ASFYNLSATE LKREAEMRKK KIEDSQMLIP 360 KSFKEKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL 420 LNPVALKRRV IPHFPAAGKK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNELLEVSEP 480 LTSXXXXXXX XXXRFSCCSC VRFEPSVSSC ICFSRSPCNS SAKLHFGYPF FHLICT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ifw_A | 4e-12 | 328 | 457 | 23 | 146 | Tether containing UBX domain for GLUT4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr012104.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018501937.1 | 0.0 | PREDICTED: plant UBX domain-containing protein 2 | ||||
Swissprot | Q9ZU93 | 1e-180 | PUX2_ARATH; Plant UBX domain-containing protein 2 | ||||
TrEMBL | A0A498IDB4 | 0.0 | A0A498IDB4_MALDO; Uncharacterized protein | ||||
STRING | XP_009351535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8944 | 25 | 29 |
Publications ? help Back to Top | |||
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