PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ARF | ||||||||
Protein Properties | Length: 845aa MW: 93854.3 Da PI: 6.7483 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el Pbr010582.1 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGEL 253 99*****************************7333.34459************************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ Pbr010582.1 254 RVGVRRA 260 ****996 PP | |||||||
2 | Auxin_resp | 114 | 1.3e-37 | 285 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e++++Gt++g++d+d+ rW++SkWr+Lk Pbr010582.1 285 AWHAILTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQKFTGTIIGTEDADTKRWRDSKWRCLK 367 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 155 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-40 | 156 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.50E-21 | 157 | 259 | No hit | No description |
SMART | SM01019 | 6.4E-23 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-21 | 159 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-35 | 285 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.1E-11 | 699 | 802 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.18E-10 | 716 | 794 | No hit | No description |
PROSITE profile | PS51745 | 22.727 | 717 | 801 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MTSSEVSIKD NCGNPRGESF SSGFSDHNDP RTVGEGQNGH STVSAGRDAE TALYTELWHA 60 CAGPLVTVPR ERERVFYFPQ GHIEQVEAST NQVADQQMPV YNLPSKILCR VINVSLKAEP 120 DTDEVFAQVT LLPEPNQDEN AVEKEPPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH 180 ADECLPPLDM SRQPPTQELV AKDLHGSEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG 240 DAFIFLRGEN GELRVGVRRA MRQQGSVPSS VISSHSMHLG VLATAWHAIL TGTMFTVYYK 300 PRTSPAEFIV PFDQYMESVK NNYSIGMRFK MRFEGEEAPE QKFTGTIIGT EDADTKRWRD 360 SKWRCLKVRW DETSTIPRPE RVSPWKIEPA LAPPALNPLP MPRPKRPRTH MVPSSPDSSV 420 HTREVGSSKV NVDPAMPGGF SRVLQGQEFP TLRGNFAESE SDTTEKSVAW PPSIDEEKID 480 VVSASRRYGS ENWMSSGRHE PTYTDLLSGF GNNVDSSHGI CPPFVDQGVA SANSMRKHSL 540 DQARSWSMLP SPLSLSLDSN QKGPLGNMSH QAQGNSRYGG FGDYSVVNGH RIELPHGNWM 600 MPPPPPSPFE NPGNARDNMP RPQMLLDKHE AVKPKDGNCK LFGIPLITPD PALSHRNMMN 660 ESPRNNQAQT FESDLNSEKS RGSKSIDNLV AVSEPALQTS QQHIRDVQGK SQGGSTRSCT 720 KVQKQGIALG RSVDLTKFNN YKELIAELDM LFEFGGELMS PKKNWMIVYT DDEGDMMLVG 780 DDPWQEFCGI VRKIFIYTRE EVQKMNPGTL NAHGEDNLSS GAEGVDAREG KCQPLPSAST 840 AEKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 38 | 389 | 4 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 38 | 389 | 4 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 38 | 389 | 4 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010582.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368800.1 | 0.0 | PREDICTED: auxin response factor 2-like | ||||
Refseq | XP_009368801.1 | 0.0 | PREDICTED: auxin response factor 2-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A498JQ11 | 0.0 | A0A498JQ11_MALDO; Auxin response factor | ||||
STRING | XP_009368800.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |