PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008785.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92817.3 Da    PI: 6.2427
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008785.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192179357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pbr008785.1 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                 5679*****************************************************97 PP
2START180.31.1e-561673752205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d+  W +++++a++l+v s+g  g+++l +++
  Pbr008785.1 167 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRSSWFRNCRSADVLNVMSTGngGTIELLYMQ 263
                  7899******************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s +  
  Pbr008785.1 264 LYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSILHIVDHMDLEPWSVPEVLRPLYESPTLL 361
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Pbr008785.1 362 AQKTTMAALRNLRQ 375
                  **********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.921680IPR001356Homeobox domain
SMARTSM003895.3E-161884IPR001356Homeobox domain
SuperFamilySSF466893.72E-172083IPR009057Homeodomain-like
CDDcd000865.68E-172181No hitNo description
PfamPF000461.1E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-192379IPR009057Homeodomain-like
CDDcd146861.78E-673112No hitNo description
PROSITE profilePS5084826.539157385IPR002913START domain
CDDcd088751.60E-79161376No hitNo description
SuperFamilySSF559617.69E-39166378No hitNo description
SMARTSM002342.2E-42166376IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-23166372IPR023393START-like domain
PfamPF018524.1E-54167375IPR002913START domain
PfamPF086701.2E-51701841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MMAVTSSCKD GGMKMQMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQTVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY  120
FRQHTQNATL ATTDTSCESV VTSGQHHLTA QQHPPPRDAS PAGLLSIAEE TLAEFLSKAT  180
GTAVEWVQLP GMKPGPDSIG IVAISHGCTG VAARACGLVG LDPTRVAEIL KDRSSWFRNC  240
RSADVLNVMS TGNGGTIELL YMQLYAPTTL APARDFWLLR YTSVLEDGSL VVCERSLNNT  300
QNGPSMPPVQ NFVRAEMLPS GYLIRPCEGG GSILHIVDHM DLEPWSVPEV LRPLYESPTL  360
LAQKTTMAAL RNLRQISQEV SQPNSAGWGR RPAALRALSQ RLSKGFNEAV NGFTDEGWSV  420
LESDGVDDVT LLVNSSPGKM MSANLYTDGV PSMSTAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADRSI DAYSAAAVKA GPCNMLGPRV GSFGDQVILP LAHTIEHEEF MEVIKIENMG  540
HYREDMIMPA ADIFLLQLCS GVDENAVGTC SELVFAPIDA SFSDDAPILP SGFRIIPLDS  600
RMDTPSPNRT LDLASALEVG PAGSRASGDN AGHSGNTKSV MTIAFQFAFE IHLQENVASM  660
ARQYVRSIIA SVQRVALALS PSRFGSHAGF RPPPGTPEAQ TLAGWICQSY RCYLGGELLK  720
TEGSESVLKS LWHHQDAILC CSLKAMPIFT FGNQAGLDML ETTLIALQDI MLEKIFDDNG  780
RKTLCSEFPQ IMQQGFMCLQ GGICMSSMGR PISYERAVAW KVLNEEETAH CICFMFINWS  840
FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008785.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774270.0FJ177427.1 Malus x domestica putative HB8 HD-ZipIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367440.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLD9ZIQ60.0D9ZIQ6_MALDO; BZIP domain class transcription factor
STRINGXP_009367440.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]