PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008294.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 20360.8 Da PI: 7.2883 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 166.1 | 4.4e-52 | 27 | 126 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr+lPian+srimkk+lP n+ki+kdaketvqecvsefisfvtse asdkc rekrktingddllwa+atlGfedy++plkvyl+kyre Pbr008294.2 27 VREQDRYLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFVTSEydaalASDKCLREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTKYREG 124 69**********************************************9888889*****************************************96 PP NF-YB 94 eg 95 ++ Pbr008294.2 125 DT 126 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.3E-50 | 24 | 142 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.51E-36 | 30 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-23 | 33 | 102 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.1E-17 | 61 | 79 | No hit | No description |
PRINTS | PR00615 | 2.1E-17 | 85 | 103 | No hit | No description |
PRINTS | PR00615 | 2.1E-17 | 104 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAEAPVSPGG VSHESGGDGS GSPRSNVREQ DRYLPIANIS RIMKKALPPN GKIAKDAKET 60 VQECVSEFIS FVTSEYDAAL ASDKCLREKR KTINGDDLLW AMATLGFEDY IDPLKVYLTK 120 YREGDTKGSG KGGDSSSKKD AQPSLNPQIS HQGSFSQGGN YSNSQVISCS SSPLTQLFSE 180 IIPSFKKVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 1e-44 | 28 | 123 | 3 | 93 | NF-YB |
4awl_B | 1e-44 | 28 | 123 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 1e-44 | 28 | 123 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008294.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018499762.1 | 2e-99 | PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2 | ||||
Swissprot | Q67XJ2 | 4e-74 | NFYBA_ARATH; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | A0A498IA82 | 1e-110 | A0A498IA82_MALDO; Uncharacterized protein | ||||
STRING | XP_009342377.1 | 5e-97 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2545 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 3e-66 | nuclear factor Y, subunit B8 |
Publications ? help Back to Top | |||
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