PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 123aa MW: 13607.7 Da PI: 6.5147 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 111.7 | 4e-35 | 23 | 102 | 19 | 97 |
NF-YC 19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 h+lPlarikki+k edvkmis eaP+++skacelfi elt rsw+ +++ krrtl+k di++av tdifdflv v Pbr007541.1 23 HSLPLARIKKIMKNsGEDVKMISGEAPIVFSKACELFIEELTRRSWMTTQQGKRRTLHKEDIESAVVGTDIFDFLVSLVS 102 89***********6269**********************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.14E-27 | 16 | 97 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.1E-32 | 20 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-22 | 24 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MRQPGRYSRL MMCGGIMGRS GPHSLPLARI KKIMKNSGED VKMISGEAPI VFSKACELFI 60 EELTRRSWMT TQQGKRRTLH KEDIESAVVG TDIFDFLVSL VSDSCNSEDI ITPVGIETLD 120 ES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-33 | 23 | 101 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007541.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350655.1 | 2e-72 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 1e-32 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A498JQG3 | 2e-67 | A0A498JQG3_MALDO; Uncharacterized protein | ||||
STRING | XP_009350655.1 | 7e-72 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 5e-35 | nuclear factor Y, subunit C3 |