PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 35216.9 Da PI: 7.9435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.6 | 1.6e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ +++++G g+W++ +++ g++R++k+c++rw++yl Pbr007283.1 15 RGPWTPEEDKRLLAYIQLHGHGSWSSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+ + Pbr007283.1 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNAH 112 89********************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.918 | 10 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.45E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.514 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGKSSGYAPE SGIKRGPWTP EEDKRLLAYI QLHGHGSWSS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN AHLKKRLAKM 120 GFDPVTHKSK AAILASANGD PKKLSNLSHI AQWESARLQA EARFVKESYL RMPESAPAVS 180 LFDDYHQLAP PIVPQCLDML EASAWESLIS MSKSSSRSAA LTNDINGLDH HHVHDHGLNM 240 NGQDCGPNFQ VPISDQQLSS LMGFDEATAP SAATGSMNIN ELFGQYCGNE CSELLAVLHH 300 NIGFESEDAW TSLGKLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-26 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-26 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007283.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338977.1 | 0.0 | PREDICTED: transcription factor MYB23-like | ||||
Swissprot | Q9LE63 | 8e-87 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A498I5M7 | 0.0 | A0A498I5M7_MALDO; Uncharacterized protein | ||||
STRING | XP_009338977.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 2e-88 | myb domain protein 106 |