PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006687.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 714aa    MW: 76404.9 Da    PI: 6.5126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006687.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16459505455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Pbr006687.1 459 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 505
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.47E-17451509No hitNo description
Gene3DG3DSA:4.10.280.102.3E-20452513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-20452518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13459505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPLSELYRIA GRVDSSQDLE NDFLELVWEN GQVVMQGQSS RTRKNPSCNS LPSYNTPKNR  60
DRDVGNSNIG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC  120
HDFLPEFSSA TANEASSNHN LASIDKRSSS SQVLRDSNPN SAHEDASLQQ RNVGKVALIG  180
RADVSRPRTG TSQLHSLSSQ QSQASYPSSR SRVSDTAGDN ISATHRGVGK NSNQISSTGG  240
FPGMKMQRQD PVIPRNTNPS IMNFTHFSRP AALAKANVQN NGAMAGSGSS SMEKIGDKDK  300
FSAATRNNLP ESMLIDSSSG APKESNSQCQ PILVRSSDEL KPTETKTLEE PCTAKRSEGA  360
CQEETSKNDI NANDKPCESA SRVSPGGEKT LEPVVASSVC SGNSVERGSD DPPHALKRKC  420
RETDESECHS DDVEDESVGV KKGVHARGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE  480
LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGMYMP PMMLPPGMQH MHGPRVAHFS  540
PMGVGMGMGM RLGMGFGMGM PDMNGASSSY PMLQVPPMQG AHFPGSHMAG HNAFNGMMGS  600
NLQMFGLPSQ GVPMQMQYAP LAPSSGGPLV KSSAGLNAGS SGGPVENVES APVSGSKDLV  660
QNMNSQVMQN NNANSSMNPT SSQGQAINEG FGQTVLVGNN VQAADANNNR ANR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463468ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9878740.0JN987874.1 Malus x domestica phytochrome-interacting factor 3 (PIF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366015.10.0PREDICTED: transcription factor PIF3-like isoform X1
RefseqXP_009366016.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A498K0I40.0A0A498K0I4_MALDO; Uncharacterized protein
STRINGXP_009366015.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-53phytochrome interacting factor 3