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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr000355.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family | HSF | ||||||||
| Protein Properties | Length: 134aa MW: 15377.5 Da PI: 8.8262 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 23.8 | 1.2e-07 | 20 | 55 | 72 | 102 |
TTT.....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 72 sks.....kekiweFkhksFkkgkkellekikrkks 102
+k+ ++k+weFkh++F+kg +++l +i rkk
Pbr000355.1 20 QKQgfkktSPKLWEFKHEKFQKGCRHMLVEITRKKC 55
1223333359***********************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.10 | 1.5E-5 | 19 | 53 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 134 aa Download sequence Send to blast |
MNYISQKFGN STCDSNPQNQ KQGFKKTSPK LWEFKHEKFQ KGCRHMLVEI TRKKCEPSAF 60 PAYLKASEES GSTSTALAAA EENNCLLLME ENKNLRKQQL ELQVQIAQFR TLENKLLDCV 120 AQYMDDHRNK ARC* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr000355.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009338727.1 | 2e-77 | PREDICTED: heat stress transcription factor B-2a-like | ||||
| TrEMBL | A0A314ZQ47 | 5e-64 | A0A314ZQ47_PRUYE; Heat stress transcription factor B-2a | ||||
| STRING | XP_009338727.1 | 8e-77 | (Pyrus x bretschneideri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF11357 | 28 | 39 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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