PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J546000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 431aa    MW: 47225.6 Da    PI: 6.9771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J546000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.8e-06174195223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F+r  nL+ H+r H
  Pavir.J546000.1.p 174 FCLICGKGFKRDANLRMHMRGH 195
                        5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.43E-5171199No hitNo description
SMARTSM003550.012173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-5175199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035571222255IPR015880Zinc finger, C2H2-like
SMARTSM0035522260282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAPEVKLRQW VEVAAALVES MPGTRRGGGA PSRRLVLLVR LITTAGSLLP SMKNPLSSNP  60
AVRQLSNTLG SPMGFGMIAN QRPSVDSKTD IPDIGKASGY EELINSLNTT QDERDDLIKC  120
PNPCGGEGSE PTPMEDLDVK ESDDGEHEGE NLPPGSYVVL QLEKEEILAP HTHFCLICGK  180
GFKRDANLRM HMRGHGDEYK TAAALAKPTK DSGSDHAPVT RYSCPFVGCK RNKEHKKFQP  240
LKTILCVKNH YKRSHCDKRY TCSRCNTKKF SVIADLKTHE KHCGRDKWLC SCGTTFSRKD  300
KLFGHVALFQ GHTPALPMDD VKVSEASEQQ QDSEPMNEIS RSMGCFPCSS SDGISNLDMK  360
MASGGCMMRA PLLDPPLKMA DDARGYYSPL SFDPCFGALD DFTRPGFDIS EDPFAFLPSG  420
CGYVHQNGDN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.69821e-154callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J546000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847340.0KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBankKF1849410.0KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819567.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2S3HPR30.0A0A2S3HPR3_9POAL; Uncharacterized protein
STRINGPavir.J14096.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-126C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]