PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J288400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 150aa MW: 15330.6 Da PI: 10.2954 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.4e-05 | 3 | 35 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++eL +llP + ++ Ka iLe+A+ Y+ L Pavir.J288400.1.p 3 RLYAELGSLLPDL----PPRAPKARILEEAIAYVGTL 35 5799********6....389*************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.794 | 1 | 35 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-4 | 1 | 36 | No hit | No description |
SuperFamily | SSF47459 | 1.14E-6 | 2 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-5 | 5 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd02116 | 8.74E-4 | 87 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MSRLYAELGS LLPDLPPRAP KARILEEAIA YVGTLRSTVA KLEAHGGVAE GAGRRTAADG 60 GGAVAADEVL AVEKASCFAA RLPAARRPGA LTRVLEVFRR HGVPVLAATV TSNAGEAAVT 120 VTTGAVALEP ALDTLRFFTL SRTDGGGRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J288400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818588.1 | 6e-57 | uncharacterized protein LOC112894950 | ||||
TrEMBL | A0A2T7DLK4 | 9e-56 | A0A2T7DLK4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea01658.1.p | 4e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 3e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J288400.1.p |