PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J257200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 229aa MW: 23539.4 Da PI: 10.6666 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.5 | 6.3e-22 | 181 | 228 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqv++C+adls+ak+yhrrhkvCe+hsk++++lv+ ++qrfCqqCsr Pavir.J257200.1.p 181 MCQVDDCRADLSSAKDYHRRHKVCEAHSKTTKALVASQMQRFCQQCSR 228 6**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-23 | 175 | 228 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.64 | 179 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.15E-20 | 180 | 228 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-15 | 182 | 228 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MQREVGPQVA PPLFMHQIQP LPPHAAAAKK RAHPWPAAVA PARAAAAAGD GNWNPKMWDW 60 DSRALTARPS SDALRLGGGG AQGQQQQQQP QPASAAAKAA EAHRQGNGAL NLQLGLRKDA 120 ATPMDASPPA PMASSPSPPA SAAAGQEPVV RPSKRVRSGS PGSAGGSGGG GGANGAASYP 180 MCQVDDCRAD LSSAKDYHRR HKVCEAHSKT TKALVASQMQ RFCQQCSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 5e-22 | 182 | 228 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J257200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069568 | 5e-44 | BT069568.2 Zea mays full-length cDNA clone ZM_BFb0168D17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320166.1 | 3e-86 | squamosa promoter-binding-like protein 15 | ||||
Swissprot | A2YX04 | 2e-70 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 2e-70 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | A0A3L6QB90 | 4e-93 | A0A3L6QB90_PANMI; Squamosa promoter-binding-like protein 15 | ||||
STRING | Pavir.Fa00457.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5456 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 3e-24 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J257200.1.p |