PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J177700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 223aa    MW: 25090.5 Da    PI: 9.9492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J177700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09171211954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Pavir.J177700.1.p 171 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 211
                        699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-14168221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7172211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-6185216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGFGHEPRQP PPPPPLRQPH QPGAAAAAIT VPSLHHLPSP PPPSSAPPPP PSRSFPVFLP  60
LPAAAPPPPP PPRPRHRALP HHRHHHEYEQ HQQEPAGHHE QEEMRQQQQE AGVAQDERGG  120
GGEDVEEELG AMKEMMYRIA AMQPVDIDPA TIKKPRRRNV RISEDPQSVA ARHRRERISE  180
RIRILQRLVP GGTKMDTASM LDEAIRYIKF LKRQVQELQH QPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J177700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-152BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-152EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972449.14e-73transcription factor HEC1
TrEMBLK3YLS39e-72K3YLS3_SETIT; Uncharacterized protein
STRINGSi015197m1e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-37bHLH family protein