PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J058700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 491aa    MW: 56740.8 Da    PI: 6.3658
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J058700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.52.2e-2326118191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn+YA   GF+vrks+ + +++ +e t r++ Cs++g ree+  k + k+rr+r  tr+gC akl++  ++ +g+w+v+++  +HnH+la
  Pavir.J058700.1.p  26 QFYNAYALGKGFTVRKSYVEWNSDRTELTLRRYICSRHGCREEKYVKkEIKQRRPRDITRVGCPAKLVIAVDRnTGQWYVKDFIDQHNHPLA 117
                        6*********************9******************9997663678999****************9998****************98 PP

               FAR1  91 p 91 
                        p
  Pavir.J058700.1.p 118 P 118
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-2226118IPR004330FAR1 DNA binding domain
PfamPF105511.6E-23222307IPR018289MULE transposase domain
PROSITE profilePS509669.248433471IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MADLESLLEY NEIVRKMFAN EYEGFQFYNA YALGKGFTVR KSYVEWNSDR TELTLRRYIC  60
SRHGCREEKY VKKEIKQRRP RDITRVGCPA KLVIAVDRNT GQWYVKDFID QHNHPLAPTD  120
LGCLLRSHRT ISDEQKAEIV ELGVARIRKH QIFEIMEMQY GGYDKEIIAG GDAQTVISHL  180
TERKNRDFDF FFKYMTDGKG HLQGLFWCDT QCLLDYAAFG DVVVFDSTYK TNRYNLPLVP  240
FVGANHHYRT ILFGCGIISH ENIESYVWLL ITFTEANVQK HHVSVITDGD LAMQSAIKEI  300
ERKWQAFLSK HEVTEDSWLY QMYEVRETWL QMKLEGKMTL LEMVQHYESC LTKVRRNEAD  360
DDANALQSEP FTEPDASILE INAKKRLMPN VFKAKVQFSV QAAKKCSLIE ILDGDDTTEY  420
IVGRIDRDIM NYVKCELSVE ANLKGISCSC HKLQSLGTPC SHIFFGLGFR DESMLPDCCV  480
LESLHSITFN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J058700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2DKR40.0A0A2K2DKR4_BRADI; Uncharacterized protein
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.J35278.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-53FAR1-related sequence 5