PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG818000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1025aa    MW: 114344 Da    PI: 5.825
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG818000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.73e-55191362118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          lke ++rwl++ ei++iL n++++ ++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+ee
  Pavir.9NG818000.1.p  19 LKEaQHRWLRPAEICEILRNYRNFCIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEE 108
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrr+yw+Lee++ +ivlvhylevk
  Pavir.9NG818000.1.p 109 NENFQRRSYWMLEEDFMHIVLVHYLEVK 136
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.64515141IPR005559CG-1 DNA-binding domain
SMARTSM010764.3E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038598.3E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.1E-7434520IPR013783Immunoglobulin-like fold
PfamPF018337.6E-10435515IPR002909IPT domain
CDDcd001020.00351435522No hitNo description
SuperFamilySSF812961.7E-17436521IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.209.7E-17615730IPR020683Ankyrin repeat-containing domain
CDDcd002047.96E-14616728No hitNo description
SuperFamilySSF484031.71E-16618730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.316619730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576636668IPR002110Ankyrin repeat
PROSITE profilePS500888.736669701IPR002110Ankyrin repeat
SuperFamilySSF525402.66E-8840893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.07842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169843872IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578866890IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MAEARRYAIA PQLDVDQILK EAQHRWLRPA EICEILRNYR NFCIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEDFMHIVLV HYLEVKGGKS SSRIRGHDDM LQAARTDSPL SQLPSHTTEG ESSVSGQATE  180
YEETESAYIY SGGAGYHPFS WTQQHENGGG PVMGASILSS YIPAPFVGNH QGFPATETTT  240
YLPVSLNEPA LGIALNGADN QLDQSSLNGL PDQGVHRMPP PLITDPSKQF PFTEGPGIES  300
FTFDEVYNGL GIKDADTVDT DQGSLWQLPG AISSFPTEDS FQQNGRSLEE TINYPLLKTQ  360
SSGLSDILKD SFKKSDSFTR WMNKELGEVD DSQIRSSSGV YWNSEETDNI IEASSCDQLD  420
QFTVDPVLAQ DQLFSISDFS PSWTYVGSKA RVLITGRFLK SDEIQRWKWS CMFGEVEVPA  480
EISADGTLRC YSPSHKPGRV PFYVTCSNRL ACSEIREFEF RPSNPKHMDV PSPHDDVKKT  540
CLKMRLDDLL SLGQDEYQAI VSNPTKEMID LSKKISSLMT DNDSWSELLK LACDNELATD  600
DKQDQFFENH LKEKLHIWLV HKAVDGGKGP SVLDEEGQGV LHLAAALGYD WAIRPTISAG  660
VSINFRDAHG WTALHWAAFC GRERTVVALI ALGAAPGALT DPTLDFPTGS TPADLASANG  720
YKGISGFLAE SALISHLQTL DLKETMGSNA SEISGLPGIG DVIERRASPL AGEGLLAGSM  780
GDSLGAVRNA AQAAARIYQV FRMQSFQRKQ AVQYEDDNGA ISDDRALSLL SVKPSKPGHL  840
DPLHAAATRI QNKYRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKII WSVGIVEKII  900
LRWRRKGAGL RGFRSTEGAV EGTSSSHSDL IQNKPAQDDC DFLQQGRKQT EERLQKALAR  960
VKSMVQYPDA RDQYQRILTV VTRLQESQAL QEKMLESSTD MDEGFVMSEF QELWDDDIPM  1020
PGNI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166820.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG818000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793889.10.0calmodulin-binding transcription activator 1-like isoform X1
TrEMBLA0A2S3ITE50.0A0A2S3ITE5_9POAL; Uncharacterized protein
STRINGPavir.Ib00572.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1