PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 284aa MW: 30078 Da PI: 7.7265

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG794200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	133	177	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L Pavir.9NG794200.1.p 133 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 177 99*********************7.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.76E-15	126	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.73E-10	126	182	No hit	No description
PROSITE profile	PS50888	15.77	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-14	130	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-6	133	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAGQPPQGPE DDFLDQFFSM AGGSYSAAAA GGGRAAGDQP FSLALSLDAA AAEASGSGKH 60 AEGGKADREA GQLPGLFPPV FGRGVQPPHL RPSPPTQVFH AQQPKQGGAA VGPQPPAPRP 120 KVRARRGQAT DPHSIAERLR RERIAERMRA LQELVPNTNK TDRAAMLDEI LDYVKFLRLQ 180 VKVLSMSRLG GAGAVAQLVA DIPLSVKGEA SDSGSKQQIW EKWSTDGTER QVAKLMEEDI 240 GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGQPVKPEPN TPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	142	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.25162	0.0	callus\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG794200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973411	0.0	EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152044.1	0.0	uncharacterized protein LOC100285681
Swissprot	O22768	2e-76	UNE12_ARATH; Transcription factor UNE12
TrEMBL	B6U846	0.0	B6U846_MAIZE; BHLH transcription factor
STRING	Pavir.J04249.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	8e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG794200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]