PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG725400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 517aa    MW: 55591.6 Da    PI: 7.9347
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG725400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14243302155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pavir.9NG725400.1.p 243 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDREEKAARAYDLAALKYWG 302
                          789******************544454478446*************************98 PP
2AP246.49.7e-15347396355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pavir.9NG725400.1.p 347 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 396
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.51E-20243312No hitNo description
SuperFamilySSF541711.57E-16243312IPR016177DNA-binding domain
SMARTSM003802.9E-28244316IPR001471AP2/ERF domain
PROSITE profilePS5103218.795244310IPR001471AP2/ERF domain
PfamPF008474.3E-11244302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15244311IPR001471AP2/ERF domain
PRINTSPR003678.6E-6245256IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18345406IPR016177DNA-binding domain
CDDcd000181.62E-23345406No hitNo description
SMARTSM003802.9E-33346410IPR001471AP2/ERF domain
PROSITE profilePS5103219.203346404IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18346404IPR001471AP2/ERF domain
PfamPF008471.3E-9347396IPR001471AP2/ERF domain
PRINTSPR003678.6E-6386406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDMNNGWLGF SLSPSAGTRG GYGGGGASRS GDAEGSCSSP AASSPLVAMP LHSDVPPQYS  60
SAPDWRHAAE AKGPKLEDFM SVTCSNKSSS SSLYDSCSHA DHEVHDLQPF SGGSYFHDHG  120
HGSSGGIGLG INMNAPPCSG FPDHHHHQFL SHHGEYFLGT PANPSAMPSM PVYSGGGGGC  180
VVGGSMSISG IKSWLREAMY VPPERSAALS LSVADVPAEP PQLLPAPMPV ARKPAQTFGQ  240
RTSQFRGVTR HRWTGRYEAH LWDNTCRKEG QTRKGRQVYL GGYDREEKAA RAYDLAALKY  300
WGPSTHINFP LSHYEKELEE MKHMSRQEFI AHLRRNSSGF SRGASMYRGV TRHHQHGRWQ  360
ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDISKYDV KRICASTHLI  420
GNDAACRRSP TRPPAALPER PSSDAPSGDQ GGAASDNSDT SDGHRGAHLL HGLQYSQHPM  480
KFEAGEGSSW MSAAAARPAA GVPSVHQLPV FALWND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG725400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6SCK60.0A0A3L6SCK6_PANMI; Uncharacterized protein
STRINGPavir.Ia04350.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-118AP2 family protein