PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG668200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 371aa    MW: 39542.6 Da    PI: 9.0968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG668200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13161207354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  Pavir.9NG668200.1.p 161 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 207
                          79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-4161210No hitNo description
PfamPF000104.9E-11161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15162229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15162228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MARWRAAACS PVAGSEPDRR ARAFLRPLPA RRRPSGRQQG ASLATVPACE SNEGARRHRG  60
RNEAAPLVPP RAPRSPPQTR PPPPFLADFY ARRALQFAYD HHHSGGASTS SDPLGLGGLY  120
MGHHGGSGMM MPPPFASSPF GDFGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR  180
LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL  240
VVRASLCCDD RADLLPDLIR ALKALRLRAL KAEITTLGGR VKNVLFITGD DSAAGCEGTA  300
GDDQHEEAAA PMSPQHTVAS IQEALRAVME RTASAAAEEP GAAPSGGAGA AGLKRQRTTS  360
LSAILENRSI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13037RRRPSGRQ
2166171ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG668200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984717.11e-180transcription factor bHLH30
SwissprotQ9S7Y18e-74BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1E5UY761e-180A0A1E5UY76_9POAL; Transcription factor bHLH30
STRINGSi039730m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]