PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG634500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 348aa    MW: 36246.3 Da    PI: 6.0665
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG634500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260941.7e-294108199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                          +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p+   r+++++sl+yeA+ r+ +PvyG+vg++++++
  Pavir.9NG634500.1.p   4 SCNGCRVLRKGCTDACTIRPCLqwikaPDAQANATVFLAKFYGRAGLLNLIDAAPDAAlRPAVFRSLLYEACGRIVNPVYGSVGLLWSGK 93 
                          6*************************999*************************99988******************************* PP

               DUF260  85 qqleqlkaelallke 99 
                          ++l+q+++e++l+++
  Pavir.9NG634500.1.p  94 WHLCQAAVEAVLRGA 108
                          *********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3793110IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-234103IPR004883Lateral organ boundaries, LOB
PRINTSPR004561.3E-699110IPR001859Trypanosoma cruzi ribosomal protein P2-like
PRINTSPR004561.3E-6146157IPR001859Trypanosoma cruzi ribosomal protein P2-like
PRINTSPR004561.3E-6158172IPR001859Trypanosoma cruzi ribosomal protein P2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCTDACT IRPCLQWIKA PDAQANATVF LAKFYGRAGL LNLIDAAPDA  60
ALRPAVFRSL LYEACGRIVN PVYGSVGLLW SGKWHLCQAA VEAVLRGAPI VQISDEDAAA  120
ASPAHLHKAA AASCYDIRHV APKSSKPPAA AAAASDAAAA APAASSAPAD DAQSSKGGSA  180
LHKVAKPGRT RFKRASSSSS PSSKKHTAKR SKPSGTDDDD DDLVMADRSH HDEEQHVQLV  240
MADHASSDDD THHHHQEASA ASLDTDAEAA SHVSQAEQTP AAAEEEEDHL QQEQQQQPGL  300
DLTLGFGLFT PVPAAACPPT PPVDFGCSRG DCSAAAEEPG VVGFQFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.78750.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG634500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-100EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-100KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805937.11e-170nucleolin 1-like
TrEMBLA0A3L6T3571e-177A0A3L6T357_PANMI; LOB domain-containing protein 41-like
STRINGPavir.J01483.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-64LOB domain-containing protein 40