PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.9NG620200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 249aa MW: 28511.9 Da PI: 7.875

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG620200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.1e-14	140	186	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WTteE+ +++++ +++G g+Wk I+r++ +++t+ q+ + qky Pavir.9NG620200.1.p 140 RLCWTTEEHRQFLRGLHMYGRGDWKNISRHFVTTKTPAQVSRHAQKY 186 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-9	133	188	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.227	135	191	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-15	137	192	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-12	139	189	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.1E-13	139	189	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-11	141	186	IPR001005	SANT/Myb domain
CDD	cd00167	6.23E-10	143	187	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDPKFNGEWS AFEINMVKSL IASHNPNNNY ADDTNRKHNS IVNQLQAWFP LKEKHQVIKL 60 YVELVVEMTM QAGQIGNQSM VAINNLVNNN YGIAVEDPTM DNMDMSRASL TGKKLEATRM 120 VEEVPHQQVI IPQQERRHKR LCWTTEEHRQ FLRGLHMYGR GDWKNISRHF VTTKTPAQVS 180 RHAQKYFHRV ERTTEKQRYS INDIGLNDAK PWVPNNSSIG FASATSSDDD YDPDPTTSTS 240 RGPVEQVT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG620200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959144.1	1e-103	transcription factor SRM1
TrEMBL	A0A3L6SUI2	1e-129	A0A3L6SUI2_PANMI; Protein REVEILLE 4-like
STRING	Pavir.J00201.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	9e-24	MYB family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG620200.1.p