PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG612800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 457aa MW: 48205.8 Da PI: 7.3195 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.3 | 1.2e-10 | 178 | 234 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ krk + g ++ +++Aa+a++ a++k++g Pavir.9NG612800.1.p 178 SIYRGVTRHRWTGRYEAHLWDnTC-RKegqKRKGRQ-GGYDKEDKAARAYDIAALKYWG 234 57*******************443.44556667777.6699999*************98 PP | |||||||
2 | AP2 | 51 | 3.5e-16 | 277 | 329 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++ge Pavir.9NG612800.1.p 277 SIYRGVTRHHHHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRGE 329 57****************988532...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.43E-18 | 178 | 242 | No hit | No description |
Pfam | PF00847 | 2.5E-7 | 178 | 234 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-14 | 178 | 243 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.504 | 179 | 242 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-18 | 179 | 248 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-12 | 179 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 180 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-11 | 277 | 329 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-18 | 277 | 337 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.22E-10 | 277 | 338 | No hit | No description |
SMART | SM00380 | 1.4E-32 | 278 | 342 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-19 | 278 | 336 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 278 | 336 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 318 | 338 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MSPPTSGAVS LAYGPAMGAG GLQDPLLLPF DDGFTDEGLL GADASLLGGA AADQTLLLLP 60 LCPGANGFGG SGSASAEGFG VQAAPASRAV MTTVAAAAAN AGSFPLAPQP APAPVSWGVA 120 TAAAAGSFSI APQPAPAPVS WEVATADAAA DGGSPAPAPA PAPPSPALPL VHTGGRTSIY 180 RGVTRHRWTG RYEAHLWDNT CRKEGQKRKG RQGGYDKEDK AARAYDIAAL KYWGANATTN 240 FPRENYIREI EDMQNMRRQD VVGSLRRNSS GFSRGASIYR GVTRHHHHGR WQARIGRVAG 300 NKDLYLGTFA TEEEAAEAYD IAALKFRGEN AVTNFEPSRY NLREIAQRDI PILSSGRRLD 360 QKPAPEAQGQ AVLSAPSFSQ SQQSSNSLPP YFLPDLHQPL PHQPPLAQPL PIYNYSSGFG 420 DPSFYWPYGN VEQKVQLDNK LELVNGLLQL ANSAAN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG612800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792711.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q5YGP7 | 1e-100 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2S3IR72 | 0.0 | A0A2S3IR72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03819.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 6e-81 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG612800.1.p |