PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG540900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 316aa    MW: 34077.4 Da    PI: 4.639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG540900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462643031054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+++L
  Pavir.9NG540900.1.p 264 KRRRERIQETVAVLRKIVPGG---IAK--DATAVLDEAICYLQYL 303
                          9******************97...333..3458999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.356254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-6264311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-6264310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGDKDNSWCH WPNSPWKFNT ESSAGNICPP DVGLVDVNLV ALPTCLNMVA APVPFFTSSI  60
AERPLPMTPR FVTTMVPSLE LSAMYPSHKR PLVFYQENHT PIAAPLVRKG TLLDPVPELQ  120
GSNETNLTDV GAEETEGIHE NTDEINALLD SDSDEGCEKV QELNRVRRPS PAENDTLSVE  180
SVASAGASAA GSARPAKKRR LCSGTDKSVV DTASSARLDH SIEQKLLVND CDAQSCCIGE  240
VESDHKFALG EGEAVEGDNP DDQKRRRERI QETVAVLRKI VPGGIAKDAT AVLDEAICYL  300
QYLKLKVKTL GAVSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.118951e-45callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG540900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795193.10.0transcription factor SAC51-like
TrEMBLA0A3L6SBV00.0A0A3L6SBV0_PANMI; Uncharacterized protein
STRINGPavir.Ia03117.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-11bHLH family protein