PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG536700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 231aa MW: 24246.2 Da PI: 5.7304 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 82.3 | 8.2e-26 | 63 | 225 | 197 | 374 |
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 gEal+V+l+++l + ++er ++L+ v++l+P++vv++e +a +++ + +f+ le + +++s++a + + r E Pavir.9NG536700.1.p 63 AAGEALVVCLQFRLGHAA------ADERADILSKVRGLNPELVVLSELDAGG-DGTAAGEFTARLELLWRFLESTSAAF----KGRDGEE 141 349*********999997......455789*****************99986.88889*****************8886....5555555 PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ll+ e+ v++ a e Wrer+ +aGF++++++ +a+++a++llrk++ +++++ g++ l Wk++p+ ++S Wr Pavir.9NG536700.1.p 142 RRLLEAEAGTSVTADAAG-----EGRDAWRERMAAAGFEEAAFGGEAVESARSLLRKYDgGWEMSASGAAGAVALRWKGQPVSFCSLWR 225 566666666666666665.....66669*******************************888888888999999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.36 | 1 | 204 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-23 | 63 | 225 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MKPRSGNQST PTRHESRDPT VIIGSPPFPS ATSAMLNTRL TSINLHLAIS RAGSLDSVHG 60 FAAAGEALVV CLQFRLGHAA ADERADILSK VRGLNPELVV LSELDAGGDG TAAGEFTARL 120 ELLWRFLEST SAAFKGRDGE ERRLLEAEAG TSVTADAAGE GRDAWRERMA AAGFEEAAFG 180 GEAVESARSL LRKYDGGWEM SASGAAGAVA LRWKGQPVSF CSLWRPACSG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG536700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728015 | 1e-158 | KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792043.1 | 1e-110 | nodulation-signaling pathway 1 protein-like | ||||
TrEMBL | A0A1E5VYC7 | 1e-109 | A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein | ||||
STRING | GRMZM2G110067_P01 | 5e-99 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6135 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 3e-37 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG536700.1.p |