PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG514100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 25195.9 Da PI: 10.042 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.6 | 8.3e-13 | 12 | 94 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+vrk++++k+k g+i + + vC ke kr++ +k +r+etrt+ + ++ v +++ gk+++++l+l HnH l Pavir.9NG514100.1.p 12 FWIRYGGQEGFEVRKRYTNKRKFYGKIRSWKCVCAKENKRDRLTKC------KRVETRTNYQIRMGVVLDQeMGKYNMADLVLGHNHIL 94 999**********************************999987666......99*************999989**************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-8 | 12 | 94 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEFNTIEEAW MFWIRYGGQE GFEVRKRYTN KRKFYGKIRS WKCVCAKENK RDRLTKCKRV 60 ETRTNYQIRM GVVLDQEMGK YNMADLVLGH NHILRLPKIS HLMVSQRKFS DYTLRDHKNY 120 YYLRGKHQRE MAYGQAGSML VYFQNKITAN PSFQYALQID PEEQIANIFW VDAKMITDYA 180 YFGDVASFNT IFGTNKESRT FGVFIGFNQL R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG514100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876512.1 | 1e-108 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025876513.1 | 1e-108 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_025877975.1 | 1e-107 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B8ALN6 | 1e-108 | B8ALN6_ORYSI; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 1e-108 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-20 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG514100.1.p |