PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG402700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 397aa MW: 44063.6 Da PI: 5.0709

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG402700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	51.9	2.4e-16	32	141	10	128
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkge 98 ++eelv ++L+++ ++++l+ +v+ +d v+P+ + + wy + d++ ++ +++ r++k+gyWk+ + +v + + Pavir.9NG402700.1.p 32 SEEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDTWYLSWSDDQQPNNsAENSIRKAKNGYWKHAESC-KVPT-SIG 111 689999.99999999999999.99**********996......3568765555554443256677899**88774.4555.477 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k +L fy+g+ap g++t Wvmhey++ Pavir.9NG402700.1.p 112 IMGVKIILEFYEGQAPCGKRTGWVMHEYQV 141 8*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-24	19	162	IPR003441	NAC domain
PROSITE profile	PS51005	26.006	23	162	IPR003441	NAC domain
Pfam	PF02365	9.3E-11	32	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MSCVSCSRTT MCPSNPELKL AALNISIRDS WSEEELVRFL AERKAEDPLP QDVLVGLDFS 60 LVDPRIFTVD TWYLSWSDDQ QPNNSAENSI RKAKNGYWKH AESCKVPTSI GIMGVKIILE 120 FYEGQAPCGK RTGWVMHEYQ VEHNDEANLP QDYKSLCRVF FQGDKKLDAK SQQNSINVDA 180 HNDNLETYLQ YLAKLEEPKV TADANEEDVC SSKVQFEQKH QSALDDTDVI ATGDYIELND 240 LLTSEASAST SENSSKRSMV SEDYFDSDAF LREILKGSNT TDGQNQDHKF SIAAPTKSAN 300 VVLSPSEQGV VHFHDNNGMV PVTSHQKPVP EGDRGEHSSQ GFQQHSLSVS SYFPSSHVKG 360 SHSNSSNSSQ SSIKSHKEQS TSKFGKIGKY CCFGSF*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MSCVSCSRTT MCPSNPELKL AALNISIRDS WSEEELVRFL AERKAEDPLP QDVLVGLDFS  60
LVDPRIFTVD TWYLSWSDDQ QPNNSAENSI RKAKNGYWKH AESCKVPTSI GIMGVKIILE  120
FYEGQAPCGK RTGWVMHEYQ VEHNDEANLP QDYKSLCRVF FQGDKKLDAK SQQNSINVDA  180
HNDNLETYLQ YLAKLEEPKV TADANEEDVC SSKVQFEQKH QSALDDTDVI ATGDYIELND  240
LLTSEASAST SENSSKRSMV SEDYFDSDAF LREILKGSNT TDGQNQDHKF SIAAPTKSAN  300
VVLSPSEQGV VHFHDNNGMV PVTSHQKPVP EGDRGEHSSQ GFQQHSLSVS SYFPSSHVKG  360
SHSNSSNSSQ SSIKSHKEQS TSKFGKIGKY CCFGSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.38794	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG402700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797455.1	0.0	NAC domain-containing protein 76-like isoform X3
TrEMBL	A0A2T8I320	0.0	A0A2T8I320_9POAL; Uncharacterized protein
STRING	Pavir.Ia02619.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10916	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	4e-16	NAC domain containing protein 102

Link Out ? help Back to Top
Phytozome	Pavir.9NG402700.1.p