 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.9NG282000.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
NAC |
Protein Properties |
Length: 309aa MW: 34377.8 Da PI: 6.0753 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG282000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 167 | 6.2e-52 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ +++ewyfF++rd+ky++g r+nra+ +gyWkatg+dk
Pavir.9NG282000.1.p 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKLDPWDLPERALFGTREWYFFTPRDRKYPNGLRPNRAAGNGYWKATGTDK 105
79****************************.88***************8877899*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl
Pavir.9NG282000.1.p 106 PVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142
**99.999****************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MGVPVRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKLDPW 60 DLPERALFGT REWYFFTPRD RKYPNGLRPN RAAGNGYWKA TGTDKPVAPR GRTLGIKKAL 120 VFYAGKAPRG VKTDWIMHEY RLADAGRAAA AKKGSLRLDD WVLCRLYNKK NEWEKMQLGK 180 ESAAGAVAKE EAMDMTTSHS HSWGETRTPE SEIVDNDPFP ELDSFPAFQD PAAAMMVPKK 240 EPQADDGNNN NAAKNSDLFV DLSYDDIQSM YSGLDMLPPP GEDFYSSLFA SPRVKGNQPA 300 GAAGLAPF*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] - Chen Q,Wang Q,Xiong L,Lou Z
A structural view of the conserved domain of rice stress-responsive NAC1. Protein Cell, 2011. 2(1): p. 55-63 [PMID:21337010]
|