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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG278800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 543aa MW: 57784.7 Da PI: 7.2804 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.8 | 7e-26 | 310 | 446 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra......tksgyW 83 ++G+rF+Ptde+l+ ++L+ k +g+++++ ++k++d+y++ P+ +++ v ++ wy Fs+rd+ky++g r++r+ + gyW Pavir.9NG278800.1.p 310 AAGVRFRPTDEDLI-FFLRLKHAGREIPV-GFFKDFDVYQASPEAIKAacGVVDDDGCWYAFSPRDRKYKNGARPKRSvveeggQQLGYW 397 58************.9*************.99**************9533344456699******************64666655589** PP NAM 84 katgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ k vl++ + ++g ++L+f+ g++p+g +t W m+ey++ Pavir.9NG278800.1.p 398 KSNTKLAYVLTSgkgeGAVVTGNVTSLTFHVGHQPDGAQTPWKMKEYAI 446 *********998665445559**************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-34 | 306 | 471 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.82 | 309 | 471 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-13 | 311 | 445 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MVIISPVDDL ASSHPPAAGA DGRAFQPPAS NPEPLLFDNL IRGAAAYPAA AGTAAWNPHP 60 HPPYASTATS SGGFNPSSSP LLSGSMMDPF SEQPPPLRIV RPAMVEPSYC YHLPTMLGFP 120 PPAFAPGPFA QGASATPAPV LVPMQTASVE PAYYYPQAQG AAGEEAATIQ KAQETTTPTP 180 RRRGRPRKTA AAVASKPVFK KAPKRATARS KRAASQQATA SATNDLATMA GQALVQKPEQ 240 AASVAAASTS DAAQAPAPCR NPMPPLLCQE QWRLQPTCSS SSLSPGGQAA AVVAGQPEVT 300 LPYAYAETFA AGVRFRPTDE DLIFFLRLKH AGREIPVGFF KDFDVYQASP EAIKAACGVV 360 DDDGCWYAFS PRDRKYKNGA RPKRSVVEEG GQQLGYWKSN TKLAYVLTSG KGEGAVVTGN 420 VTSLTFHVGH QPDGAQTPWK MKEYAIPENQ HAPDGSATRL NDWVVCKLFY KERRKKKDKS 480 GEDGENADQA GGDQGTQMVS TDLQQAHGDF ERDLCVEDYP GYDDAFAEQT HAANCNILHR 540 QS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-21 | 308 | 477 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-21 | 308 | 477 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-21 | 308 | 477 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-21 | 308 | 477 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-21 | 308 | 477 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-21 | 308 | 477 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-21 | 308 | 477 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 187 | RRGRPRK |
2 | 472 | 477 | RRKKKD |
3 | 473 | 478 | RKKKDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG278800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6S3Y6 | 0.0 | A0A3L6S3Y6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J00150.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 5e-25 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG278800.1.p |