PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG197600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20016.2 Da PI: 10.3753 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.5e-17 | 92 | 174 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + l l +k+a ++ ++e++ l+l +++g++W+v l+ ++k++++ +++GWk+ v++n+L+ gD+++F+l ++ + +++++++rk Pavir.9NG197600.1.p 92 CYLGLCRKYAHQYL--PREGQILRL-QQHGKVWQVLLC-TNKRNSIRFSRGWKKIVSENKLQIGDICLFELLRNeKVLTMNIHIIRK 174 78899999996663..456656665.56*********5.888889*************************99998999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 73 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-20 | 73 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.98E-19 | 76 | 170 | No hit | No description |
SMART | SM01019 | 5.4E-5 | 77 | 171 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 79 | 174 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 92 | 174 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MQSSGSKYPT PAEKKGPNQG TKKTNTSSST CHLNAPESDQ EIYSTASYIF PPSTHLTQMQ 60 RMKVERRVQD ICSSIPIFGS VMTKCNITRN PCYLGLCRKY AHQYLPREGQ ILRLQQHGKV 120 WQVLLCTNKR NSIRFSRGWK KIVSENKLQI GDICLFELLR NEKVLTMNIH IIRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG197600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796319.1 | 1e-101 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A2S3IK50 | 1e-102 | A0A2S3IK50_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01271.1.p | 1e-124 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG197600.1.p |