 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.9NG148200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
FAR1 |
| Protein Properties |
Length: 256aa MW: 29046.1 Da PI: 11.7875 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG148200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 25.3 | 4.9e-08 | 209 | 250 | 2 | 43 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43
f+ Y+ + GF+vrk++++k+k +g++ + ++vC +eg+r++
Pavir.9NG148200.1.p 209 FWICYGGQKGFEVRKRYTNKRKSDGKVSSCRYVCANEGHRKK 250
8999***********************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MFFLLARTLV AVRRGDRDRG SGARVVGGWA GLVGSRGGRT GTSLYSHAMS TVNLRSCGAS 60
RAGSLKQLSC RLPVSRGSRS LRLAYSAAGS QPPTMEHRTH SRRWASAQHE DPHSSFFYRE 120
HSAFWRHTSR FGARKNRRRR RTSRTSSGRR RSYWLDHPSI TNCVRIHRRS VEPSKFCIFD 180
MEENSVGVLP SLLPEIGMEF NTIDEAWMFW ICYGGQKGFE VRKRYTNKRK SDGKVSSCRY 240
VCANEGHRKK IKGII*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC078840 | 3e-67 | AC078840.6 Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence. |
| GenBank | AC084023 | 3e-67 | AC084023.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence. |
| GenBank | AL732648 | 3e-67 | AL732648.3 Oryza sativa chromosome 12, . BAC OSJNBb0020J15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014966 | 3e-67 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014968 | 3e-67 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012618 | 3e-67 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
