PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG061200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 313aa MW: 32781.3 Da PI: 8.6535 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 75.6 | 6.7e-24 | 243 | 305 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el++lkk ++ +++e+ Pavir.9NG061200.1.p 243 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 305 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.0E-18 | 239 | 303 | No hit | No description |
SMART | SM00338 | 5.3E-21 | 243 | 307 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-21 | 243 | 305 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.587 | 245 | 308 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.75E-11 | 246 | 301 | No hit | No description |
CDD | cd14702 | 4.48E-19 | 248 | 298 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 250 | 265 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MASSASTTSG DDERPSAPPR DPPAGAAPPQ AHAEWVASMQ AYYAAGGQPY AWHAAQQHML 60 AAAAAAAGAP YGTPMPFHVS FHPAYYAHAA MATSVPYTAG EALAVAEGKS KRKSSGAPSV 120 GSASGSSNGG SEEASEKRDA SAGHKLLPSA KRRKSTGANG QGEPSQAAIM QDVAAEARSA 180 AKRPGKLSVS TTEMAAISNA RPNLNIGIDL WSNSPVKAET SGPIQINAAA PSHDVPLSHM 240 QDERELKRER RKQSNRESAR RSRLRKQQEC EELAQKVTDL TAINGTLRSE LDQLKKACED 300 MEAENSQLMV SN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 259 | 265 | RRSRLRK |
2 | 259 | 266 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.35462 | 1e-108 | callus |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG061200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317833.1 | 1e-150 | DNA-binding protein EMBP-1 isoform X2 | ||||
Swissprot | P25032 | 1e-58 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A3L6TLH8 | 1e-167 | A0A3L6TLH8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J09275.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32150.1 | 2e-27 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG061200.1.p |