PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG000600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 379aa MW: 41173 Da PI: 6.1554 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23 | 2e-07 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Pavir.9NG000600.1.p 139 HSCKVCGKGFKRDANLRMHMRGH 161 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.14E-5 | 137 | 164 | No hit | No description |
PROSITE profile | PS50157 | 12.321 | 139 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 139 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-6 | 139 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 141 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 43 | 189 | 222 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 27 | 227 | 249 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEVWNNVESS MEVHRELHDH SQEAGGSGSD DPRTTVLTYL TFLEHKIAHL RGIICSAPQP 60 PRQIVSAELS CIAVQLVSIS NSLAAASGAT AEEDAKSPPR AATPSEGDSD SSDDERLPPA 120 GSYEVIELGK EEILAPHVHS CKVCGKGFKR DANLRMHMRG HGEEYKTAAA LAKPGRDAPP 180 PASAARCFYS CPFVGCKRNR EHKSFQPLKT AVCVKNHYRR SHCDKSYTCR RCNVKRFSVL 240 ADLRTHEKHC GRDRWVCSCG TSFSRKDKLF GHVAAFDGHA PALPPEEDDA ADHSAANGLG 300 NASDQMLMGT EAVSRMANDQ ECFSDSIFDD LSCSDIKGFA LTDRQCLDDG RGSLSPMDLY 360 SCDFDGFDLF GAPGIADF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG000600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794847.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q9C8N5 | 3e-99 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A3L6SDL0 | 0.0 | A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | Pavir.Ia00191.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-92 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG000600.1.p |