PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG607600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 434aa    MW: 46201.8 Da    PI: 8.1605
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG607600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.9e-40101161262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  Pavir.9KG607600.1.p 101 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 161
                          7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2797150IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32103159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.929105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAGCRVGGGG GDCLIKLFGK TIPVPEVAAA TAAVGEADKD IQQSGSSTSE PKGQENTLQD  60
STGSPLQQEV ADTEDSSAAK NSSGDQQQSE TANQKEKLKK PDKILPCPRC NSMDTKFCYY  120
NNYNINQPRH FCKNCQRYWT AGGAMRNVPV GAGRRKSKSA SAASHFLQRV RAALPIDPLC  180
TAAKTNGTVL SFGSDMPSLD LSEQMKHLKE KLVPITRIKS SDDRSVGSCT EGSAKGEDSN  240
QMNQKEKVTA DKSENVVQHP CMNGVTMWPF SCAPPPACYT SGIAIPFYPA AAAYWGCMVP  300
GAWNAPWPPH SQSESASSLS TASPASTKSN CLTPGKRSRD SDEEGDTKGN GKVWVPKTIR  360
IDDADEVARS SILSLIGING DKVGKDGRGC KLARVFEQKE EAKTATHTVI NSLPFLQGNP  420
AALSRSLTFQ EGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34910.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG607600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693750.0AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence.
GenBankHQ5400860.0HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796665.10.0cyclic dof factor 1-like
TrEMBLA0A3L6S6E20.0A0A3L6S6E2_PANMI; Cyclic dof factor 1-like
STRINGPavir.Ib00446.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-51cycling DOF factor 2