PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG521200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 765aa    MW: 84518.7 Da    PI: 6.5192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG521200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-095193347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  Pavir.9KG521200.1.p 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93
                         6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-104497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1674798IPR017884SANT domain
SMARTSM007175.1E-74896IPR001005SANT/Myb domain
CDDcd001678.98E-75194No hitNo description
PfamPF002499.4E-75193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MEEEVRGELN PLLQTIEFAP STSDPNQKLD LVQPSDPNQK PAKKPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML  120
RWWSLLEKFS CSASKLHLKP RRFKTFVEAL ANQLVKDRNK SRRKCPRVDM CISSPSPIVS  180
KSPGIESFPV KFLPVDAQNG TRVASPKGAF FKRMPETNCS KSGATKGDLS ATRTVKQKRR  240
AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNAINPGV LCNVDARTLT SSPDKLSNVD  300
GISTNQMKEA DSQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSSRK KISSVLEHLN  360
RKWGNSNITS GELILFPYCA HQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS  420
LVELEAGVSE ISLTHFENCM IPEDIQVKSP SGDKACVQKN GTLFSNSILE QYPCSSKDQS  480
ALLRITPSCI GKNTELPEQP TSAPPSQFGS QKQGQAPVTQ AFEDGQGMNC AAISEGEWAD  540
TLTDISVGYL LTEASKGADL DCIGTSSIKN ALFLENPCSY DSFDAAVALH VSRFQASEQP  600
AHSPHSTIWG AEETCDGFSF NLSASRKQEG SNTPSSSSPD TDSEVHPSNS EGFKGFLQDL  660
TGGEAAGDNT YNDAKDREEF CAKSPPRNED TNELKDQSLA DIYWTDSLGP LDLDIPSVRY  720
QADDLLIGDS QNSWNRMMAN SLDAFRNLSF FSSVDKNDSI PSIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.184930.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG521200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796637.10.0TSL-kinase interacting protein 1 isoform X1
RefseqXP_025796638.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A2T7CF770.0A0A2T7CF77_9POAL; Uncharacterized protein
STRINGPavir.Ib01009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-174TSL-kinase interacting protein 1