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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG400200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 33993.1 Da PI: 4.6916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.4e-05 | 263 | 302 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + +iL +A+ Y+++L Pavir.9KG400200.1.p 263 KRRRERIQETVAALRKIVPGG---IAK--DATAILDEAICYLQYL 302 9******************97...333..4459**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.756 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-7 | 263 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 263 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.09E-4 | 263 | 307 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGDKDNPWCH WPNSPWKFNT ESSAGNICPP DVGLVDTNLV ALPTCLNTVA APVPFFTASI 60 AERPLPMTPR FVTTLVPSLE LSSLYPSHKR PLVFYQENHT PITAPLVRKG TLDPVPELQG 120 SNETNLTDVG AEETEGIHEN TDEINALLYS DSDEGYEKVQ ELNIIRRPSP AENDTLSVES 180 VASAGASASG SARPAKKRRL CSGTDKSVVD TASSARPDHS IEQKLLVNDC DAQSCCIGEV 240 ESDHKFARGE GEAVEGDSPD DQKRRRERIQ ETVAALRKIV PGGIAKDATA ILDEAICYLQ 300 YLKLKVKTLG AASL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11895 | 4e-55 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG400200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795193.1 | 0.0 | transcription factor SAC51-like | ||||
TrEMBL | A0A3L6SBV0 | 0.0 | A0A3L6SBV0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia03117.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10031 | 18 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 2e-10 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG400200.1.p |