PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG393300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 354aa    MW: 36985.9 Da    PI: 5.1413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG393300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS83.34.1e-26188348197374
                 GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                           pgEal+V+l+++l +        ++er ++L+ v++l+P++vv++e +a   +++ + +f+  le  + +++s++a +    + r   E
  Pavir.9KG393300.1.p 188 GPGEALVVCLQFRLGHAT------ADERADILSKVRGLNPELVVLSELDAGG-DGTAAGEFTARLELLWRFLESTSAAF----KGRDGEE 266
                          469*********999987......555789*****************99986.88889*****************8886....4555555 PP

                 GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          r+ll+ e+   v++  a      e    Wrer+ +aGF++++++ +a+++ak+llrk++  g+++ + sg++ l Wk++p+ ++S Wr
  Pavir.9KG393300.1.p 267 RRLLEAEAGTSVTADAAG-----EGRDVWRERMAAAGFEEAAFGGEAVESAKSLLRKYD-GGWEMSSASGAVALRWKGQPVSFCSLWR 348
                          556666666666666665.....56669******************************9.88*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.9811329IPR005202Transcription factor GRAS
PfamPF035141.4E-23188348IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSCHEQEHPE LAAATSTNGF DWLEDSISFL AADVDIAGGY GWWSNPAEAQ QDDIGSVVAQ  60
TLSPPAPLTT TSSPLAHASP STASPPVSSP SEPSSKKRKS PAHKASNNSV SNQRRRAEQD  120
RPGGGGGGRK GGSKGGGAGS DRDTRWAEQL LYPCAAAVEA GNLSRAQHLF YLAISRAVSL  180
DSVRGLAGPG EALVVCLQFR LGHATADERA DILSKVRGLN PELVVLSELD AGGDGTAAGE  240
FTARLELLWR FLESTSAAFK GRDGEERRLL EAEAGTSVTA DAAGEGRDVW RERMAAAGFE  300
EAAFGGEAVE SAKSLLRKYD GGWEMSSASG AVALRWKGQP VSFCSLWRPA CSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG393300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689934.11e-109PREDICTED: nodulation-signaling pathway 1 protein
TrEMBLJ3LPN71e-108J3LPN7_ORYBR; Uncharacterized protein
STRINGOB03G30130.11e-108(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-34GRAS family protein